recipe bamtocov

Extract coverage information from BAM files, supporting stranded and physical coverage and streams.

Homepage:

https://github.com/telatin/bamtocov

License:

MIT

Recipe:

/bamtocov/meta.yaml

Links:

biotools: bamtocov, doi: 10.3390/bioengineering8050059

A collection of tools to extract coverage information from BAM and CRAM files, supporting target (BED, GFF) and reporting the output in bedGraph (BED) or WIG format.

package bamtocov

(downloads) docker_bamtocov

Versions:
2.7.0-02.6.1-12.6.1-02.6.0-02.5.0-12.5.0-02.4.0-02.3.0-02.2.0-1

2.7.0-02.6.1-12.6.1-02.6.0-02.5.0-12.5.0-02.4.0-02.3.0-02.2.0-12.2.0-02.1.0-12.1.0-02.0.4-02.0.2-12.0.2-02.0.001-02.0.000-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bamtocov

and update with:

conda update bamtocov

or use the docker container:

docker pull quay.io/biocontainers/bamtocov:<tag>

(see bamtocov/tags for valid values for <tag>)

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