recipe bamtools

C++ API & command-line toolkit for working with BAM data.

Homepage:

https://github.com/pezmaster31/bamtools

Documentation:

https://github.com/pezmaster31/bamtools/wiki

License:

MIT / MIT

Recipe:

/bamtools/meta.yaml

Links:

biotools: bamtools

package bamtools

versions:

2.5.3-0,  2.5.2-6,  2.5.2-5,  2.5.2-4,  2.5.2-3,  2.5.2-2,  2.5.2-1,  2.5.2-0,  2.5.1-10, 

2.5.3-0,  2.5.2-6,  2.5.2-5,  2.5.2-4,  2.5.2-3,  2.5.2-2,  2.5.2-1,  2.5.2-0,  2.5.1-10,  2.5.1-9,  2.5.1-7,  2.5.1-6,  2.5.1-5,  2.5.1-4,  2.5.1-3,  2.5.1-2,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.3.0-2,  2.3.0-1,  2.3.0-0

depends jsoncpp:

>=1.9.6,<1.9.7.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bamtools

and update with::

   mamba update bamtools

To create a new environment, run:

mamba create --name myenvname bamtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bamtools:<tag>

(see `bamtools/tags`_ for valid values for ``<tag>``)

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