recipe bamtools

C++ API & command-line toolkit for working with BAM data

Homepage

https://github.com/pezmaster31/bamtools

License

MIT

Recipe

/bamtools/meta.yaml

Links

biotools: bamtools

package bamtools

Versions

2.5.1-9,  2.5.1-7,  2.5.1-6,  2.5.1-5,  2.5.1-4,  2.5.1-3,  2.5.1-2,  2.5.1-0,  2.4.1-1, 

2.5.1-9,  2.5.1-7,  2.5.1-6,  2.5.1-5,  2.5.1-4,  2.5.1-3,  2.5.1-2,  2.5.1-0,  2.4.1-1,  2.4.1-0,  2.4.0-3,  2.4.0-2,  2.4.0-1,  2.4.0-0,  2.3.0-2,  2.3.0-1,  2.3.0-0

Depends

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• encode-blacklist

• comparative-annotation-toolkit

• vulcan

• augustus

• scalpel

• libgab

• funannotate

• ngs-disambiguate

• hla-la

• bioconvert

• frc

• sga

• grid

• piranha

• vphaser2

• cage

• telseq

• smeg

• leehom

• piret

• idemuxcpp

• tpmcalculator

• transcomb

• rgi

• covtobed

• repdenovo

• braker2

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bamtools

and update with:

conda update bamtools

or use the docker container:

docker pull quay.io/biocontainers/bamtools:<tag>

(see bamtools/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bamtools/README.html)