recipe barcode_splitter

Split multiple fastq files by matching barcodes in one or more of the sequence files. Barcodes in the tab-delimited barcodes.txt file are matched against the beginning (or end) of the specified index read(s). By default, barcodes must match exactly, but –mistmatches can be set higher if desired. Compressed input is read (from all files) if the first input file name ends in .gz. Reading of compressed input can be forced with the gzipin option.

Homepage

https://bitbucket.org/princeton_genomics/barcode_splitter

License

GNU

Recipe

/barcode_splitter/meta.yaml

Links

doi: 10.5281/zenodo.2566616

package barcode_splitter

(downloads) docker_barcode_splitter

Versions

0.18.5-0, 0.18.4-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install barcode_splitter

and update with:

conda update barcode_splitter

or use the docker container:

docker pull quay.io/biocontainers/barcode_splitter:<tag>

(see barcode_splitter/tags for valid values for <tag>)