Package Recipe 'baredsc'

recipe baredsc

baredSC (Bayesian Approach to Retreive Expression Distribution of Single Cell) is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data.

Homepage:: https://github.com/lldelisle/baredSC/
License:: GPL3
Recipe:: /baredsc/meta.yaml

package baredsc¶

Versions:

1.1.1-0, 1.1.0-0

Depends:

anndata >=0.7
corner >=2.0.0
matplotlib-base >=3.1.1
numpy >=1.16
pandas >=0.25.0
python >=3.7
samsam >=0.1.2
scipy >=1.3.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install baredsc

and update with:

conda update baredsc

or use the docker container:

docker pull quay.io/biocontainers/baredsc:<tag>

(see baredsc/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/baredsc/README.html)