recipe barrnap

Barrnap predicts the location of ribosomal RNA genes in genomes. (bacteria, archaea, metazoan mitochondria and eukaryotes.)

Homepage:

https://github.com/tseemann/barrnap

License:

GPLv3

Recipe:

/barrnap/meta.yaml

Links:

biotools: barrnap

package barrnap

(downloads) docker_barrnap

versions:
0.9-4,  0.9-3,  0.9-2,  0.9-1,  0.9-0,  0.8-1,  0.8-0,  0.7-4,  0.7-3, 

0.9-4,  0.9-3,  0.9-2,  0.9-1,  0.9-0,  0.8-1,  0.8-0,  0.7-4,  0.7-3,  0.7-2,  0.7-1,  0.7-0,  0.3-2,  0.3-1,  0.3-0,  0.2-1,  0.2-0

depends bedtools:

depends hmmer:

>=3.1b

depends perl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install barrnap

and update with::

   mamba update barrnap

To create a new environment, run:

mamba create --name myenvname barrnap

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/barrnap:<tag>

(see `barrnap/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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