recipe basenji

Sequential regulatory activity predictions with deep convolutional neural networks.

Homepage:

https://github.com/calico/basenji

License:

Apache / Apache-2.0

Recipe:

/basenji/meta.yaml

package basenji

Versions:

0.6-0,  0.5.1-0,  0.5-0,  0.4.1647b01-0

Depends:

• astropy

• cooler

• cooltools

• h5py

• intervaltree

• joblib

• matplotlib-base

• natsort

• networkx

• numpy

• packaging

• pandas

• pillow

• pybedtools

• pybigwig

• pysam

• python >=3.8

• scikit-learn

• scipy

• seaborn

• statsmodels

• tabulate

• tensorflow

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install basenji

and update with:

conda update basenji

or use the docker container:

docker pull quay.io/biocontainers/basenji:<tag>

(see basenji/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/basenji/README.html)