recipe batch_brb

A tool for the automation of best reciprocal BLAST and phylogenetic analysis using FastTree

Homepage:

https://github.com/erin-r-butterfield/batch_brb

License:

GPL3

Recipe:

/batch_brb/meta.yaml

package batch_brb

Versions:

1.0.1-1,  1.0.1-0,  1.0-0

Depends:

• bash >=5.0.018

• biopython >=1.78

• blast >=2.10.1

• fasttree >=2.1.10

• muscle >=3.8.1551

• numpy >=1.19.2

• pandas >=1.1.3

• perl-fast

• python >=3.8.6

• sed >=4.8

• seqkit >=0.13.2

• sqlite >=3.33.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install batch_brb

and update with:

conda update batch_brb

or use the docker container:

docker pull quay.io/biocontainers/batch_brb:<tag>

(see batch_brb/tags for valid values for <tag>)

Download stats

Link to this page

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