recipe batch_brb

A tool for the automation of best reciprocal BLAST and phylogenetic analysis using FastTree

Homepage:

https://github.com/erin-r-butterfield/batch_brb

License:

GPL3

Recipe:

/batch_brb/meta.yaml

package batch_brb

versions:

1.0.1-1,  1.0.1-0,  1.0-0

depends bash:

>=5.0.018

depends biopython:

>=1.78

depends blast:

>=2.10.1

depends fasttree:

>=2.1.10

depends muscle:

>=3.8.1551

depends numpy:

>=1.19.2

depends pandas:

>=1.1.3

depends perl-fast:

depends python:

>=3.8.6

depends sed:

>=4.8

depends seqkit:

>=0.13.2

depends sqlite:

>=3.33.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install batch_brb

and update with::

   mamba update batch_brb

To create a new environment, run:

mamba create --name myenvname batch_brb

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/batch_brb:<tag>

(see `batch_brb/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/batch_brb/README.html)