recipe bax2bam

bax2bam converts the legacy PacBio basecall format (bax.h5) into the BAM basecall format

Homepage

https://github.com/PacificBiosciences/bax2bam

License

BSD-3-Clause-Clear

Recipe

/bax2bam/meta.yaml

package bax2bam

(downloads) docker_bax2bam

Versions

0.0.9-6, 0.0.9-5, 0.0.9-4, 0.0.9-3, 0.0.9-1, 0.0.9-0

Depends
  • blasr_libcpp 5.3.3.*

  • hdf5 >=1.10.4,<1.10.5.0a0

  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • pbbam 0.23.0.*

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bax2bam

and update with:

conda update bax2bam

or use the docker container:

docker pull quay.io/biocontainers/bax2bam:<tag>

(see bax2bam/tags for valid values for <tag>)