recipe bbmap

BBMap is a short read aligner, as well as various other bioinformatic tools.

Homepage

https://sourceforge.net/projects/bbmap

Documentation

https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/

License

UC-LBL license (see package)

Recipe

/bbmap/meta.yaml

Links

biotools: bbmap, doi: 10.1371/journal.pone.0185056

package bbmap

(downloads) docker_bbmap

Versions
38.87-038.86-038.84-138.84-038.79-038.76-038.75-038.73-038.72-0

38.87-038.86-038.84-138.84-038.79-038.76-038.75-038.73-038.72-038.71-038.70-038.69-038.68-038.67-038.65-038.63-038.62-038.61b-038.58-038.57-038.56-038.51-038.49-038.46-038.45-038.44-038.22-138.22-038.20-038.19-038.18-038.16-038.06-238.06-037.99-137.99-037.96-037.95-037.90-037.78-037.77-037.75-037.66-037.62-137.62-037.52-137.52-037.17-137.17-037.10-137.10-037.02-036.84-036.32-035.85-235.85-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bbmap

and update with:

conda update bbmap

or use the docker container:

docker pull quay.io/biocontainers/bbmap:<tag>

(see bbmap/tags for valid values for <tag>)

Notes

BBMap is a series of Java programs, but they come with a number of custom wrapper shell scripts. Each of these is symlinked to the conda bin directory during install.