recipe bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Homepage

https://github.com/chapmanb/bcbio-nextgen

License

MIT

Recipe

/bcbio-nextgen/meta.yaml

Links

biotools: bcbio-nextgen

package bcbio-nextgen

(downloads) docker_bcbio-nextgen

Versions
1.2.3-11.2.3-01.2.2-01.2.1-01.2.0-01.1.9-01.1.8-01.1.7-01.1.6-0

1.2.3-11.2.3-01.2.2-01.2.1-01.2.0-01.1.9-01.1.8-01.1.7-01.1.6-01.1.6a-11.1.6a-01.1.5-01.1.5a-11.1.5a-01.1.4-01.1.4a-31.1.4a-21.1.4a-11.1.4a-01.1.3-01.1.3a-41.1.3a-31.1.3a-21.1.3a-11.1.3a-01.1.2-01.1.2a-31.1.2a-21.1.2a-11.1.2a-01.1.1-01.1.1a-121.1.1a-111.1.1a-101.1.1a-91.1.1a-81.1.1a-71.1.1a-61.1.1a-51.1.1a-41.1.1a-31.1.1a-21.1.1a-11.1.1a-01.1.0-01.1.0a-111.1.0a-81.1.0a-71.1.0a-61.1.0a-51.1.0a-41.1.0a-31.1.0a-21.1.0a-11.1.0a-01.0.9-01.0.9a-91.0.9a-81.0.9a-71.0.9a-61.0.9a-51.0.9a-41.0.9a-31.0.9a-21.0.9a-11.0.9a-01.0.8-01.0.8a-51.0.8a-41.0.8a-31.0.8a-21.0.8a-11.0.8a-01.0.7-11.0.7-01.0.7a0-71.0.7a0-61.0.7a0-51.0.7a0-41.0.7a0-31.0.7a0-21.0.7a0-11.0.7a0-01.0.6-01.0.6a0-61.0.6a0-51.0.6a0-41.0.6a0-31.0.6a0-21.0.6a0-11.0.6a0-01.0.5-01.0.5a-61.0.5a-51.0.5a-41.0.5a-31.0.5a-21.0.5a-11.0.5a-01.0.4-01.0.4a0-31.0.4a0-21.0.4a0-11.0.4a0-01.0.3-01.0.3a-101.0.3a-91.0.3a-81.0.3a-71.0.3a-61.0.3a-51.0.3a-41.0.3a-31.0.3a-21.0.3a-11.0.3a-01.0.2-01.0.2a-11.0.2a-01.0.1-11.0.1-01.0.1a0-41.0.1a0-31.0.1a0-21.0.1a0-11.0.1a0-01.0.0-01.0.0a0-81.0.0a0-71.0.0a0-61.0.0a0-51.0.0a0-41.0.0a0-31.0.0a0-11.0.0a0-00.9.9-00.9.9a0-40.9.9a0-30.9.9a0-20.9.9a0-10.9.9a0-00.9.8-00.9.8a0-70.9.8a0-60.9.8a0-50.9.8a0-40.9.8a0-30.9.8a0-20.9.8a0-10.9.8a0-00.9.7-00.9.7a-50.9.7a-40.9.7a-30.9.7a-20.9.7a-10.9.7a-00.9.6-00.9.6a-30.9.6a-20.9.6a-10.9.6a-00.9.5-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bcbio-nextgen

and update with:

conda update bcbio-nextgen

or use the docker container:

docker pull quay.io/biocontainers/bcbio-nextgen:<tag>

(see bcbio-nextgen/tags for valid values for <tag>)