bcbio-nextgen

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Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Home https://github.com/chapmanb/bcbio-nextgen
Versions 0.9.5, 0.9.6, 0.9.6a, 0.9.7, 0.9.7a, 0.9.8, 0.9.8a0, 0.9.9, 0.9.9a0, 1.0.0, 1.0.0a0, 1.0.1, 1.0.1a0, 1.0.2, 1.0.2a, 1.0.3, 1.0.3a, 1.0.4, 1.0.4a0, 1.0.5, 1.0.5a, 1.0.6, 1.0.6a0, 1.0.7, 1.0.7a0, 1.0.8, 1.0.8a, 1.0.9, 1.0.9a, 1.1.0a
License MIT
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bcbio-nextgen
Links biotools: bcbio-nextgen, doi: 10.1093/bioinformatics/btv061

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bcbio-nextgen

and update with:

conda update bcbio-nextgen

docker

A Docker container is available at https://quay.io/repository/biocontainers/bcbio-nextgen.