recipe bcftools-snvphyl-plugin

The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection\ of microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin

Homepage:

https://github.com/phac-nml/snvphyl-tools

License:

Apache / Apache-2.0

Recipe:

/bcftools-snvphyl-plugin/meta.yaml

package bcftools-snvphyl-plugin

Versions:

1.9-7,  1.9-6,  1.9-5,  1.9-4,  1.9-3,  1.9-2,  1.9-1,  1.9-0,  1.8-2, 

1.9-7,  1.9-6,  1.9-5,  1.9-4,  1.9-3,  1.9-2,  1.9-1,  1.9-0,  1.8-2,  1.8-0,  1.6-1,  1.6-0,  1.5-0

Depends:

• bcftools 1.9.*

• bzip2 >=1.0.8,<2.0a0

• curl >=7.83.1,<8.0a0

• libgcc-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• openssl >=1.1.1q,<1.1.2a

• xz >=5.2.6,<5.3.0a0

• zlib >=1.2.12,<1.3.0a0

Required By:

• snvphyl-tools

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bcftools-snvphyl-plugin

and update with:

conda update bcftools-snvphyl-plugin

or use the docker container:

docker pull quay.io/biocontainers/bcftools-snvphyl-plugin:<tag>

(see bcftools-snvphyl-plugin/tags for valid values for <tag>)

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