recipe bcftools-snvphyl-plugin

The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection\ of microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin

Homepage

https://github.com/phac-nml/snvphyl-tools

License

Apache / Apache-2.0

Recipe

/bcftools-snvphyl-plugin/meta.yaml

package bcftools-snvphyl-plugin

Versions

1.9-2, 1.9-1, 1.9-0, 1.8-2, 1.8-0, 1.6-1, 1.6-0, 1.5-0

Depends

• bcftools 1.9.*

• bzip2 >=1.0.6,<2.0a0

• curl >=7.64.1,<8.0a0

• libgcc-ng >=7.3.0

• openssl >=1.1.1a,<1.1.2a

• xz >=5.2.4,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

• snvphyl-tools

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bcftools-snvphyl-plugin

and update with:

conda update bcftools-snvphyl-plugin

or use the docker container:

docker pull quay.io/biocontainers/bcftools-snvphyl-plugin:<tag>

(see bcftools-snvphyl-plugin/tags for valid values for <tag>)

Link to this page

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