recipe beacon2-import

Seamlessly import and query genomic variant data from a beacon






Effortlessly import genetic variants from targeted Galaxy histories or local repositories into your beacon instance with our utility. Simplify querying and analysis of genetic data, enabling comprehensive genetic inquiries with ease

package beacon2-import

(downloads) docker_beacon2-import



depends bioblend:


depends cyvcf2:

depends dataclasses:

depends jsonschema:

depends pymongo:

depends python:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install beacon2-import

and update with::

   mamba update beacon2-import

To create a new environment, run:

mamba create --name myenvname beacon2-import

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `beacon2-import/tags`_ for valid values for ``<tag>``)

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