- recipe beast-pype
A package of BEAST 2 pipelines for phylodynamics.
- Homepage:
- License:
GPL-2.0-only
- Recipe:
- package beast-pype¶
- versions:
0.2.0-0,0.1.4-0,0.1.2-0- depends arviz:
>=0.23.0- depends bash_kernel:
>=0.10.0- depends beast2:
>=2.6.3- depends beast2-xml:
>=1.5.0- depends biopython:
>=1.86- depends click:
>=8.3.1- depends dark-matter:
>=5.1.2- depends ete3:
>=3.1.1- depends ipykernel:
>=4.3.1- depends ipywidgets:
>=8.1.8- depends iqtree:
>=3.0.1- depends jupyter:
>=1.1.1- depends matplotlib-base:
>=3.10.8- depends nbconvert:
>=7.16.6- depends nbformat:
>=5.10.4- depends numpy:
>=2.4.0- depends pandas:
>=2.3.3- depends papermill:
>=2.6.0- depends parallel:
>=2051122- depends python:
>=3.10- depends python-dateutil:
>=2.9.0- depends pyyaml:
>=6.0.3- depends scipy:
>=1.16.3- depends seaborn:
>=0.13.2- depends seqkit:
>=2.12.0- depends treetime:
>=0.11.4- depends xarray:
>=2025.12.0- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install beast-pype and update with:: mamba update beast-pype
To create a new environment, run:
mamba create --name myenvname beast-pype
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/beast-pype:<tag> (see `beast-pype/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/beast-pype/README.html)
