recipe bedtk

Bedtk is a set of simple tools to process BED files.

Homepage:

https://github.com/lh3/bedtk

License:

MIT

Recipe:

/bedtk/meta.yaml

Links:

biotools: bedtk

Bedtk is a set of simple tools to process BED files. It so far implements intersection, subtraction, sorting, merging and computing the breadth of coverage. Bedtk is not as versatile as bedtools and never aims to match the bedtools feature set. It instead focuses on performance. Bedtk is several to tens of times faster and uses a fraction of memory. It also provides a few convenient functions. For example, sorting, merging and intersection can be done in one go without Unix pipes.

package bedtk

Versions:

0.0.r25.dirty-2,  0.0.r25.dirty-1,  0.0.r25.dirty-0

Depends:

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

Required By:

• dipcall

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bedtk

and update with:

conda update bedtk

or use the docker container:

docker pull quay.io/biocontainers/bedtk:<tag>

(see bedtk/tags for valid values for <tag>)

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