recipe bgen-cpp

Reference implementation of the BGEN format, written in C++

Homepage:

https://enkre.net/cgi-bin/code/bgen/

License:

Boost Software License

Recipe:

/bgen-cpp/meta.yaml

Reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software, or as a reference for developers writing their own implementations of the BGEN format. Includes applications for working with BGEN files: bgenix, cat-bgen, and edit-bgen.

package bgen-cpp

(downloads) docker_bgen-cpp

versions:

1.1.7-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
osx-arm64,  linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bgen-cpp

and update with::

   mamba update bgen-cpp

To create a new environment, run:

mamba create --name myenvname bgen-cpp

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bgen-cpp:<tag>

(see `bgen-cpp/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bgen-cpp/README.html)