recipe bifidoannotator

Fine-grained annotation of bifidobacterial enzymes involved in human-milk glycan (HMG) utilization

Homepage:

https://github.com/nicholaspucci/bifidoAnnotator

License:

MIT

Recipe:

/bifidoannotator/meta.yaml

bifidoAnnotator performs hierarchical annotation of enzymes involved in human-milk glycan (HMG) utilization using MMseqs2, generates data matrices, and creates publication-ready heatmaps.

package bifidoannotator

versions:

1.0.0-0

depends matplotlib-base:

>=3.3.0

depends mmseqs2:

depends numpy:

>=1.18.0

depends pandas:

>=1.0.0

depends python:

>=3.8

depends scipy:

>=1.5.0

depends seaborn:

>=0.11.0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bifidoannotator

and update with::

   mamba update bifidoannotator

To create a new environment, run:

mamba create --name myenvname bifidoannotator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bifidoannotator:<tag>

(see `bifidoannotator/tags`_ for valid values for ``<tag>``)

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