recipe bin2cell

Join subcellular Visium HD bins into cells

Homepage:

https://github.com/Teichlab/bin2cell

License:

MIT

Recipe:

/bin2cell/meta.yaml

package bin2cell

versions:

0.3.3-0

depends fastparquet:

depends numpy:

<2

depends opencv:

depends python:

>=3.7

depends scanpy:

depends stardist:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bin2cell

and update with::

   mamba update bin2cell

To create a new environment, run:

mamba create --name myenvname bin2cell

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bin2cell:<tag>

(see `bin2cell/tags`_ for valid values for ``<tag>``)

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