recipe bioconductor-a4base

Automated Affymetrix Array Analysis Base Package

Homepage

https://bioconductor.org/packages/3.14/bioc/html/a4Base.html

License

GPL-3

Recipe

/bioconductor-a4base/meta.yaml

Links

biotools: a4base, doi: 10.1038/nmeth.3252

Base utility functions are available for the Automated Affymetrix Array Analysis set of packages.

package bioconductor-a4base

Versions

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0, 

1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-a4core >=1.42.0,<1.43.0

• bioconductor-a4preproc >=1.42.0,<1.43.0

• bioconductor-annaffy >=1.66.0,<1.67.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-multtest >=2.50.0,<2.51.0

• r-base >=4.1,<4.2.0a0

• r-glmnet

• r-gplots

• r-mpm

Required By

• bioconductor-a4

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-a4base

and update with:

conda update bioconductor-a4base

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-a4base:<tag>

(see bioconductor-a4base/tags for valid values for <tag>)

Download stats

Link to this page

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