recipe bioconductor-a4base

Automated Affymetrix Array Analysis

Homepage

https://bioconductor.org/packages/3.9/bioc/html/a4Base.html

License

GPL-3

Recipe

/bioconductor-a4base/meta.yaml

Links

biotools: a4base, doi: 10.1038/nmeth.3252

package bioconductor-a4base

Versions

1.30.0-0, 1.28.0-0, 1.26.0-0

Depends

• bioconductor-a4core >=1.30.0,<1.31.0

• bioconductor-a4preproc >=1.30.0,<1.31.0

• bioconductor-annaffy >=1.54.0,<1.55.0

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-multtest >=2.38.0,<2.39.0

• r-base >=3.5.1,<3.5.2.0a0

• r-glmnet

• r-gplots

• r-mpm

Required By

• bioconductor-a4

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-a4base

and update with:

conda update bioconductor-a4base

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-a4base:<tag>

(see bioconductor-a4base/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-a4base/README.html)