recipe bioconductor-a4base

Automated Affymetrix Array Analysis Base Package

Homepage

https://bioconductor.org/packages/3.11/bioc/html/a4Base.html

License

GPL-3

Recipe

/bioconductor-a4base/meta.yaml

Links

biotools: a4base, doi: 10.1038/nmeth.3252

Automated Affymetrix Array Analysis

package bioconductor-a4base

Versions

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-a4core >=1.36.0,<1.37.0

• bioconductor-a4preproc >=1.36.0,<1.37.0

• bioconductor-annaffy >=1.60.0,<1.61.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-multtest >=2.44.0,<2.45.0

• r-base >=4.0,<4.1.0a0

• r-glmnet

• r-gplots

• r-mpm

Required By

• bioconductor-a4

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-a4base

and update with:

conda update bioconductor-a4base

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-a4base:<tag>

(see bioconductor-a4base/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-a4base/README.html)