recipe bioconductor-a4preproc

Automated Affymetrix Array Analysis Preprocessing Package

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/a4Preproc.html

License:

GPL-3

Recipe:

/bioconductor-a4preproc/meta.yaml

Links:

biotools: a4preproc, doi: 10.1038/nmeth.3252

Utility functions to pre-process data for the Automated Affymetrix Array Analysis set of packages.

package bioconductor-a4preproc

(downloads) docker_bioconductor-a4preproc

versions:
1.50.0-0,  1.48.0-0,  1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0, 

1.50.0-0,  1.48.0-0,  1.46.0-0,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-a4preproc

and update with::

   mamba update bioconductor-a4preproc

To create a new environment, run:

mamba create --name myenvname bioconductor-a4preproc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-a4preproc:<tag>

(see `bioconductor-a4preproc/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-a4preproc/README.html)