- recipe bioconductor-abseqr
Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/abseqR.html
- License:
GPL-3 | file LICENSE
- Recipe:
AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages. abseqR empowers the users of abseqPy (https://github.com/malhamdoosh/abseqPy) with plotting and reporting capabilities and allows them to generate interactive HTML reports for the convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.
- package bioconductor-abseqr¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocstyle
>=2.26.0,<2.27.0
pandoc
>=1.19.2.1
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-abseqr
and update with:
conda update bioconductor-abseqr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-abseqr:<tag>
(see bioconductor-abseqr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-abseqr/README.html)