recipe bioconductor-abseqr

Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/abseqR.html

License:

GPL-3 | file LICENSE

Recipe:

/bioconductor-abseqr/meta.yaml

AbSeq is a comprehensive bioinformatic pipeline for the analysis of sequencing datasets generated from antibody libraries and abseqR is one of its packages. abseqR empowers the users of abseqPy (https://github.com/malhamdoosh/abseqPy) with plotting and reporting capabilities and allows them to generate interactive HTML reports for the convenience of viewing and sharing with other researchers. Additionally, abseqR extends abseqPy to compare multiple repertoire analyses and perform further downstream analysis on its output.

package bioconductor-abseqr

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0, 

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• pandoc >=1.19.2.1

• r-base >=4.2,<4.3.0a0

• r-circlize

• r-flexdashboard

• r-ggcorrplot

• r-ggdendro

• r-ggplot2

• r-gridextra

• r-knitr

• r-plotly

• r-plyr

• r-png

• r-rcolorbrewer

• r-reshape2

• r-rmarkdown

• r-stringr

• r-vegan

• r-venndiagram

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-abseqr

and update with:

conda update bioconductor-abseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-abseqr:<tag>

(see bioconductor-abseqr/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-abseqr/README.html)