recipe bioconductor-adacgh2

Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ADaCGH2.html

License

GPL (>= 3)

Recipe

/bioconductor-adacgh2/meta.yaml

package bioconductor-adacgh2

(downloads) docker_bioconductor-adacgh2

Versions

2.24.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-adacgh2

and update with:

conda update bioconductor-adacgh2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adacgh2:<tag>

(see bioconductor-adacgh2/tags for valid values for <tag>)