recipe bioconductor-adam

ADAM: Activity and Diversity Analysis Module

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ADAM.html

License:

GPL (>= 2)

Recipe:

/bioconductor-adam/meta.yaml

ADAM is a GSEA R package created to group a set of genes from comparative samples (control versus experiment) belonging to different species according to their respective functions (Gene Ontology and KEGG pathways as default) and show their significance by calculating p-values referring togene diversity and activity. Each group of genes is called GFAG (Group of Functionally Associated Genes).

package bioconductor-adam

Versions:

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0, 

1.14.0-0,  1.10.0-2,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-keggrest >=1.38.0,<1.39.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-dplyr >=0.7.6

• r-dt >=0.4

• r-knitr

• r-pbapply >=1.3-4

• r-rcpp >=0.12.18

• r-stringr >=1.3.1

Required By:

• bioconductor-adamgui

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-adam

and update with:

conda update bioconductor-adam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adam:<tag>

(see bioconductor-adam/tags for valid values for <tag>)

Download stats

Link to this page

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