recipe bioconductor-adamgui

Activity and Diversity Analysis Module Graphical User Interface

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ADAMgui.html

License:

GPL (>= 2)

Recipe:

/bioconductor-adamgui/meta.yaml

ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.

package bioconductor-adamgui

Versions:

1.14.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends:

• bioconductor-adam >=1.14.0,<1.15.0

• bioconductor-go.db >=3.16.0,<3.17.0

• r-base >=4.2,<4.3.0a0

• r-colorramps >=2.3

• r-data.table >=1.11.4

• r-dplyr >=0.7.6

• r-dt >=0.4

• r-ggplot2 >=3.0.0

• r-ggpubr >=0.1.8

• r-ggrepel >=0.8.0

• r-ggsignif >=0.4.0

• r-gridextra >=2.3

• r-knitr

• r-rcolorbrewer >=1.1-2

• r-reshape2 >=1.4.3

• r-shiny >=1.1.0

• r-shinyjs >=1.0

• r-stringi >=1.2.4

• r-stringr >=1.3.1

• r-testthat

• r-varhandle >=2.0.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-adamgui

and update with:

conda update bioconductor-adamgui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adamgui:<tag>

(see bioconductor-adamgui/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-adamgui/README.html)