- recipe bioconductor-adamgui
Activity and Diversity Analysis Module Graphical User Interface
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ADAMgui.html
- License:
GPL (>= 2)
- Recipe:
ADAMgui is a Graphical User Interface for the ADAM package. The ADAMgui package provides 2 shiny-based applications that allows the user to study the output of the ADAM package files through different plots. It's possible, for example, to choose a specific GFAG and observe the gene expression behavior with the plots created with the GFAGtargetUi function. Features such as differential expression and foldchange can be easily seen with aid of the plots made with GFAGpathUi function.
- package bioconductor-adamgui¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-adam
>=1.14.0,<1.15.0
bioconductor-go.db
>=3.16.0,<3.17.0
r-base
>=4.2,<4.3.0a0
r-colorramps
>=2.3
r-data.table
>=1.11.4
r-dplyr
>=0.7.6
r-dt
>=0.4
r-ggplot2
>=3.0.0
r-ggpubr
>=0.1.8
r-ggrepel
>=0.8.0
r-ggsignif
>=0.4.0
r-gridextra
>=2.3
r-rcolorbrewer
>=1.1-2
r-reshape2
>=1.4.3
r-shiny
>=1.1.0
r-shinyjs
>=1.0
r-stringi
>=1.2.4
r-stringr
>=1.3.1
r-varhandle
>=2.0.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-adamgui
and update with:
conda update bioconductor-adamgui
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-adamgui:<tag>
(see bioconductor-adamgui/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-adamgui/README.html)