- recipe bioconductor-adductomicsr
Processing of adductomic mass spectral datasets
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/adductomicsR.html
- License:
Artistic-2.0
- Recipe:
Processes MS2 data to identify potentially adducted peptides from spectra that has been corrected for mass drift and retention time drift and quantifies MS1 level mass spectral peaks.
- package bioconductor-adductomicsr¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-1
- Depends:
bioconductor-adductdata
>=1.14.0,<1.15.0
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-mzr
>=2.32.0,<2.33.0
r-ade4
>=1.7.6
r-base
>=4.2,<4.3.0a0
r-bootstrap
>=2017.2
r-data.table
>=1.10.4
r-dosnow
>=1.0.14
r-dplyr
>=0.7.5
r-dt
>=0.2
r-fastcluster
>=1.1.22
r-foreach
>=1.4.3
r-fpc
>=2.1.10
r-orgmassspecr
>=0.4.6
r-pastecs
>=1.3.18
r-pracma
>=2.0.4
r-rcppeigen
>=0.3.3.3.0
r-reshape2
>=1.4.2
r-rvest
>=0.3.2
r-smoother
>=1.1
r-zoo
>=1.8
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-adductomicsr
and update with:
conda update bioconductor-adductomicsr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-adductomicsr:<tag>
(see bioconductor-adductomicsr/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-adductomicsr/README.html)