recipe bioconductor-adductomicsr

Processes MS2 data to identify potentially adducted peptides from spectra that has been corrected for mass drift and retention time drift and quantifies MS1 level mass spectral peaks.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/adductomicsR.html

License

Artistic-2.0

Recipe

/bioconductor-adductomicsr/meta.yaml

package bioconductor-adductomicsr

Versions

1.0.0-1

Depends

• bioconductor-adductdata >=1.0.0,<1.1.0

• bioconductor-annotationhub >=2.16.0,<2.17.0

• bioconductor-experimenthub >=1.10.0,<1.11.0

• bioconductor-mzr >=2.18.0,<2.19.0

• r-ade4 >=1.7.6

• r-base >=3.6,<3.7.0a0

• r-bootstrap >=2017.2

• r-data.table >=1.10.4

• r-dosnow >=1.0.14

• r-dplyr >=0.7.5

• r-dt >=0.2

• r-fastcluster >=1.1.22

• r-foreach >=1.4.3

• r-fpc >=2.1.10

• r-orgmassspecr >=0.4.6

• r-pastecs >=1.3.18

• r-pracma >=2.0.4

• r-rcppeigen >=0.3.3.3.0

• r-reshape2 >=1.4.2

• r-rvest >=0.3.2

• r-smoother >=1.1

• r-zoo >=1.8

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-adductomicsr

and update with:

conda update bioconductor-adductomicsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adductomicsr:<tag>

(see bioconductor-adductomicsr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-adductomicsr/README.html)