recipe bioconductor-adductomicsr

Processing of adductomic mass spectral datasets

Homepage

https://bioconductor.org/packages/3.14/bioc/html/adductomicsR.html

License

Artistic-2.0

Recipe

/bioconductor-adductomicsr/meta.yaml

Processes MS2 data to identify potentially adducted peptides from spectra that has been corrected for mass drift and retention time drift and quantifies MS1 level mass spectral peaks.

package bioconductor-adductomicsr

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.0.0-1

Depends

• bioconductor-adductdata >=1.10.0,<1.11.0

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-experimenthub >=2.2.0,<2.3.0

• bioconductor-mzr >=2.28.0,<2.29.0

• r-ade4 >=1.7.6

• r-base >=4.1,<4.2.0a0

• r-bootstrap >=2017.2

• r-data.table >=1.10.4

• r-dosnow >=1.0.14

• r-dplyr >=0.7.5

• r-dt >=0.2

• r-fastcluster >=1.1.22

• r-foreach >=1.4.3

• r-fpc >=2.1.10

• r-orgmassspecr >=0.4.6

• r-pastecs >=1.3.18

• r-pracma >=2.0.4

• r-rcppeigen >=0.3.3.3.0

• r-reshape2 >=1.4.2

• r-rvest >=0.3.2

• r-smoother >=1.1

• r-zoo >=1.8

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-adductomicsr

and update with:

conda update bioconductor-adductomicsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-adductomicsr:<tag>

(see bioconductor-adductomicsr/tags for valid values for <tag>)

Download stats

Link to this page

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