recipe bioconductor-affxparser

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix’ Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/affxparser.html

License

LGPL (>= 2)

Recipe

/bioconductor-affxparser/meta.yaml

package bioconductor-affxparser

(downloads) docker_bioconductor-affxparser

Versions

1.56.0-1, 1.56.0-0, 1.54.0-0, 1.52.0-0, 1.50.0-0, 1.48.0-0

Depends
  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • r-base >=3.6,<3.7.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affxparser

and update with:

conda update bioconductor-affxparser

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affxparser:<tag>

(see bioconductor-affxparser/tags for valid values for <tag>)