recipe bioconductor-affycoretools

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/affycoretools.html

License

Artistic-2.0

Recipe

/bioconductor-affycoretools/meta.yaml

Links

biotools: affycoretools, doi: 10.1038/nmeth.3252

package bioconductor-affycoretools

(downloads) docker_bioconductor-affycoretools

Versions

1.54.0-0, 1.52.2-0, 1.50.6-0

Depends bioconductor-affy

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-gcrma

>=2.54.0,<2.55.0

Depends bioconductor-gostats

>=2.48.0,<2.49.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-oligoclasses

>=1.44.0,<1.45.0

Depends bioconductor-reportingtools

>=2.22.0,<2.23.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dbi

Depends r-ggplot2

Depends r-gplots

Depends r-hwriter

Depends r-lattice

Depends r-rsqlite

Depends r-xtable

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affycoretools

and update with:

conda update bioconductor-affycoretools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affycoretools:<tag>

(see bioconductor-affycoretools/tags for valid values for <tag>)