- recipe bioconductor-affyilm
Linear Model of background subtraction and the Langmuir isotherm
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/affyILM.html
- License
GPL-3
- Recipe
- Links
biotools: affyilm, doi: 10.1186/1748-7188-4-15
affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.
- package bioconductor-affyilm¶
-
- Versions
1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.0-0
,1.46.0-0
,1.44.0-0
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-0
- Depends
bioconductor-affxparser
>=1.66.0,<1.67.0
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-gcrma
>=2.66.0,<2.67.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-affyilm
and update with:
conda update bioconductor-affyilm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-affyilm:<tag>
(see bioconductor-affyilm/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-affyilm/README.html)