recipe bioconductor-affyilm

Linear Model of background subtraction and the Langmuir isotherm

Homepage

https://bioconductor.org/packages/3.14/bioc/html/affyILM.html

License

GPL-3

Recipe

/bioconductor-affyilm/meta.yaml

Links

biotools: affyilm, doi: 10.1186/1748-7188-4-15

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

package bioconductor-affyilm

Versions

1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0,  1.32.0-0, 

1.46.0-0,  1.44.0-0,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-0

Depends

• bioconductor-affxparser >=1.66.0,<1.67.0

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-gcrma >=2.66.0,<2.67.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-affyilm

and update with:

conda update bioconductor-affyilm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affyilm:<tag>

(see bioconductor-affyilm/tags for valid values for <tag>)

Download stats

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