recipe bioconductor-affyio

Tools for parsing Affymetrix data files

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/affyio.html

License:

LGPL (>= 2)

Recipe:

/bioconductor-affyio/meta.yaml

Links:

biotools: affyio, doi: 10.1038/nmeth.3252

Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.

package bioconductor-affyio

Versions:

1.68.0-1,  1.68.0-0,  1.64.0-2,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0, 

1.68.0-1,  1.68.0-0,  1.64.0-2,  1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.42.0-0,  1.40.0-1,  1.40.0-0

Depends:

• bioconductor-zlibbioc >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-oligoclasses

• bioconductor-scan.upc

• bioconductor-sscore

• bioconductor-affy

• bioconductor-puma

• bioconductor-eximir

• bioconductor-oligo

• bioconductor-makecdfenv

• r-msqrob

• bioconductor-gcrma

• bioconductor-crlmm

• bioconductor-affylmgui

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-affyio

and update with:

conda update bioconductor-affyio

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-affyio:<tag>

(see bioconductor-affyio/tags for valid values for <tag>)

Download stats

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