recipe bioconductor-agdex

Agreement of Differential Expression Analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/AGDEX.html

License

GPL Version 2 or later

Recipe

/bioconductor-agdex/meta.yaml

Links

biotools: agdex, doi: 10.1093/bioinformatics/btr362

A tool to evaluate agreement of differential expression for cross-species genomics

package bioconductor-agdex

Versions

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-gseabase >=1.50.0,<1.51.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-agdex

and update with:

conda update bioconductor-agdex

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-agdex:<tag>

(see bioconductor-agdex/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-agdex/README.html)