recipe bioconductor-aggregatebiovar

Differential Gene Expression Analysis for Multi-subject scRNA-seq

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/aggregateBioVar.html

License:

GPL-3

Recipe:

/bioconductor-aggregatebiovar/meta.yaml

For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.

package bioconductor-aggregatebiovar

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-3,  1.0.0-2

Depends:

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-matrix

• r-rlang

• r-tibble

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-aggregatebiovar

and update with:

conda update bioconductor-aggregatebiovar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aggregatebiovar:<tag>

(see bioconductor-aggregatebiovar/tags for valid values for <tag>)

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