recipe bioconductor-aggregatebiovar

Differential Gene Expression Analysis for Multi-subject scRNA-seq

Homepage

https://bioconductor.org/packages/3.14/bioc/html/aggregateBioVar.html

License

GPL-3

Recipe

/bioconductor-aggregatebiovar/meta.yaml

For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.

package bioconductor-aggregatebiovar

Versions

1.4.0-0,  1.2.0-0,  1.0.0-3,  1.0.0-2

Depends

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-matrix

• r-rlang

• r-tibble

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aggregatebiovar

and update with:

conda update bioconductor-aggregatebiovar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aggregatebiovar:<tag>

(see bioconductor-aggregatebiovar/tags for valid values for <tag>)

Download stats

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