- recipe bioconductor-aggregatebiovar
Differential Gene Expression Analysis for Multi-subject scRNA-seq
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/aggregateBioVar.html
- License:
GPL-3
- Recipe:
For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.
- package bioconductor-aggregatebiovar¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-3
,1.0.0-2
- Depends:
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-aggregatebiovar
and update with:
conda update bioconductor-aggregatebiovar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-aggregatebiovar:<tag>
(see bioconductor-aggregatebiovar/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-aggregatebiovar/README.html)