recipe bioconductor-ahpathbankdbs

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/AHPathbankDbs.html

License

Artistic-2.0

Recipe

/bioconductor-ahpathbankdbs/meta.yaml

The package provides a comprehensive mapping table of metabolites and proteins linked to PathBank pathways. The tables include HMDB, KEGG, ChEBI, CAS, Drugbank, Uniprot IDs. The tables are provided for each of the 10 species ("Homo sapiens", "Escherichia coli", "Mus musculus", "Arabidopsis thaliana", "Saccharomyces cerevisiae", "Bos taurus", "Caenorhabditis elegans", "Rattus norvegicus", "Drosophila melanogaster", and "Pseudomonas aeruginosa"). These table information can be used for Metabolite Set (and other) Enrichment Analysis.

package bioconductor-ahpathbankdbs

(downloads) docker_bioconductor-ahpathbankdbs

Versions

0.99.5-10.99.5-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ahpathbankdbs

and update with:

conda update bioconductor-ahpathbankdbs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ahpathbankdbs:<tag>

(see bioconductor-ahpathbankdbs/tags for valid values for <tag>)

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