recipe bioconductor-ahwikipathwaysdbs

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Homepage

https://bioconductor.org/packages/3.14/data/annotation/html/AHWikipathwaysDbs.html

License

Artistic-2.0

Recipe

/bioconductor-ahwikipathwaysdbs/meta.yaml

The package provides a comprehensive mapping table of metabolites linked to Wikipathways pathways. The tables include HMDB, KEGG, ChEBI, Drugbank, PubChem compound, ChemSpider, KNApSAcK, and Wikidata IDs plus CAS and InChIKey. The tables are provided for each of the 25 species ("Anopheles gambiae", "Arabidopsis thaliana", "Bacillus subtilis", "Bos taurus", "Caenorhabditis elegans", "Canis familiaris", "Danio rerio", "Drosophila melanogaster", "Equus caballus", "Escherichia coli", "Gallus gallus", "Gibberella zeae", "Homo sapiens", "Hordeum vulgare", "Mus musculus", "Mycobacterium tuberculosis", "Oryza sativa", "Pan troglodytes", "Plasmodium falciparum", "Populus trichocarpa", "Rattus norvegicus", "Saccharomyces cerevisiae", "Solanum lycopersicum", "Sus scrofa", "Zea mays"). These table information can be used for Metabolite Set Enrichment Analysis.

package bioconductor-ahwikipathwaysdbs

(downloads) docker_bioconductor-ahwikipathwaysdbs

Versions

0.99.4-10.99.4-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ahwikipathwaysdbs

and update with:

conda update bioconductor-ahwikipathwaysdbs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ahwikipathwaysdbs:<tag>

(see bioconductor-ahwikipathwaysdbs/tags for valid values for <tag>)

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