recipe bioconductor-aims

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AIMS.html

License

Artistic-2.0

Recipe

/bioconductor-aims/meta.yaml

Links

biotools: aims, doi: 10.1093/jnci/dju357

package bioconductor-aims

(downloads) docker_bioconductor-aims

Versions

1.14.1-0, 1.14.0-0, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-e1071

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aims

and update with:

conda update bioconductor-aims

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aims:<tag>

(see bioconductor-aims/tags for valid values for <tag>)