- recipe bioconductor-airpart
Differential cell-type-specific allelic imbalance
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/airpart.html
- License
GPL-2
- Recipe
Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets.
- package bioconductor-airpart¶
-
- Versions
1.2.0-0
,1.0.0-0
- Depends
bioconductor-apeglm
>=1.16.0,<1.17.0
bioconductor-complexheatmap
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-scater
>=1.22.0,<1.23.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-airpart
and update with:
conda update bioconductor-airpart
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-airpart:<tag>
(see bioconductor-airpart/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-airpart/README.html)