recipe bioconductor-alabaster.base

Save Bioconductor Objects To File






Save Bioconductor data structures into file artifacts, and load them back into memory. This is a more robust and portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

package bioconductor-alabaster.base

(downloads) docker_bioconductor-alabaster.base



depends bioconductor-alabaster.schemas:


depends bioconductor-alabaster.schemas:


depends bioconductor-rhdf5:


depends bioconductor-rhdf5:


depends bioconductor-rhdf5lib:


depends bioconductor-rhdf5lib:


depends bioconductor-s4vectors:


depends bioconductor-s4vectors:


depends libblas:


depends libgcc-ng:


depends liblapack:


depends libstdcxx-ng:


depends r-base:


depends r-jsonlite:

depends r-jsonvalidate:

depends r-rcpp:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-alabaster.base

and update with::

   mamba update bioconductor-alabaster.base

To create a new environment, run:

mamba create --name myenvname bioconductor-alabaster.base

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-alabaster.base/tags`_ for valid values for ``<tag>``)

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