recipe bioconductor-alabaster.bumpy

Save and Load BumpyMatrices to/from file






Save BumpyMatrix objects into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

package bioconductor-alabaster.bumpy

(downloads) docker_bioconductor-alabaster.bumpy



depends bioconductor-alabaster.base:


depends bioconductor-biocgenerics:


depends bioconductor-bumpymatrix:


depends bioconductor-iranges:


depends bioconductor-s4vectors:


depends r-base:


depends r-matrix:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-alabaster.bumpy

and update with::

   mamba update bioconductor-alabaster.bumpy

To create a new environment, run:

mamba create --name myenvname bioconductor-alabaster.bumpy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-alabaster.bumpy/tags`_ for valid values for ``<tag>``)

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