recipe bioconductor-allelicimbalance

Investigates Allele Specific Expression

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/AllelicImbalance.html

License:

GPL-3

Recipe:

/bioconductor-allelicimbalance/meta.yaml

Provides a framework for allelic specific expression investigation using RNA-seq data.

package bioconductor-allelicimbalance

Versions:

1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.20.0-1,  1.20.0-0

Depends:

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-bsgenome >=1.62.0,<1.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-variantannotation >=1.40.0,<1.41.0

• r-base >=4.1,<4.2.0a0

• r-gridextra

• r-lattice

• r-latticeextra

• r-nlme

• r-seqinr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-allelicimbalance

and update with:

conda update bioconductor-allelicimbalance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-allelicimbalance:<tag>

(see bioconductor-allelicimbalance/tags for valid values for <tag>)

Download stats

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-allelicimbalance/README.html)