recipe bioconductor-allelicimbalance

Investigates Allele Specific Expression

Homepage

https://bioconductor.org/packages/3.10/bioc/html/AllelicImbalance.html

License

GPL-3

Recipe

/bioconductor-allelicimbalance/meta.yaml

Provides a framework for allelic specific expression investigation using RNA-seq data.

package bioconductor-allelicimbalance

Versions

1.24.0-0, 1.22.0-1, 1.20.0-1, 1.20.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-bsgenome >=1.54.0,<1.55.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicalignments >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-gviz >=1.30.0,<1.31.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rsamtools >=2.2.0,<2.3.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• bioconductor-variantannotation >=1.32.0,<1.33.0

• r-base >=3.6,<3.7.0a0

• r-gridextra

• r-lattice

• r-latticeextra

• r-nlme

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-allelicimbalance

and update with:

conda update bioconductor-allelicimbalance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-allelicimbalance:<tag>

(see bioconductor-allelicimbalance/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-allelicimbalance/README.html)