recipe bioconductor-allelicimbalance

Provides a framework for allelic specific expression investigation using RNA-seq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/AllelicImbalance.html

License

GPL-3

Recipe

/bioconductor-allelicimbalance/meta.yaml

package bioconductor-allelicimbalance

Versions

1.20.0-1, 1.20.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-bsgenome >=1.50.0,<1.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-gviz >=1.26.0,<1.27.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-base >=3.5.1,<3.5.2.0a0

• r-gridextra

• r-lattice

• r-latticeextra

• r-nlme

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-allelicimbalance

and update with:

conda update bioconductor-allelicimbalance

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-allelicimbalance:<tag>

(see bioconductor-allelicimbalance/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-allelicimbalance/README.html)