- recipe bioconductor-allelicimbalance
Investigates Allele Specific Expression
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/AllelicImbalance.html
- License:
GPL-3
- Recipe:
Provides a framework for allelic specific expression investigation using RNA-seq data.
- package bioconductor-allelicimbalance¶
-
- Versions:
1.32.0-0
,1.30.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.20.0-1
,1.20.0-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-gviz
>=1.38.0,<1.39.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-allelicimbalance
and update with:
conda update bioconductor-allelicimbalance
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-allelicimbalance:<tag>
(see bioconductor-allelicimbalance/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-allelicimbalance/README.html)