recipe bioconductor-alpine

alpine

Homepage

https://bioconductor.org/packages/3.13/bioc/html/alpine.html

License

GPL (>=2)

Recipe

/bioconductor-alpine/meta.yaml

Links

biotools: alpine

Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.

package bioconductor-alpine

Versions

1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0, 

1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicalignments >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-graph >=1.70.0,<1.71.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rbgl >=1.68.0,<1.69.0

• bioconductor-rsamtools >=2.8.0,<2.9.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• r-base >=4.1,<4.2.0a0

• r-speedglm

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-alpine

and update with:

conda update bioconductor-alpine

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-alpine:<tag>

(see bioconductor-alpine/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-alpine/README.html)