recipe bioconductor-alpine

alpine

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/alpine.html

License:

GPL (>=2)

Recipe:

/bioconductor-alpine/meta.yaml

Links:

biotools: alpine

Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.

package bioconductor-alpine

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0, 

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rbgl >=1.74.0,<1.75.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-speedglm

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-alpine

and update with:

conda update bioconductor-alpine

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-alpine:<tag>

(see bioconductor-alpine/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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