- recipe bioconductor-alpine
alpine
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/alpine.html
- License
GPL (>=2)
- Recipe
- Links
biotools: alpine
Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.
- package bioconductor-alpine¶
-
- Versions
1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-graph
>=1.72.0,<1.73.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rbgl
>=1.70.0,<1.71.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-alpine
and update with:
conda update bioconductor-alpine
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-alpine:<tag>
(see bioconductor-alpine/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-alpine/README.html)