recipe bioconductor-alpine

Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/alpine.html

License

GPL (>=2)

Recipe

/bioconductor-alpine/meta.yaml

Links

biotools: alpine

package bioconductor-alpine

Versions

1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0, 1.0.0-0

Depends

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-genomicalignments >=1.18.0,<1.19.0

• bioconductor-genomicfeatures >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-graph >=1.60.0,<1.61.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rbgl >=1.58.0,<1.59.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-speedglm

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-alpine

and update with:

conda update bioconductor-alpine

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-alpine:<tag>

(see bioconductor-alpine/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-alpine/README.html)