recipe bioconductor-alpine

alpine

Homepage

https://bioconductor.org/packages/3.11/bioc/html/alpine.html

License

GPL (>=2)

Recipe

/bioconductor-alpine/meta.yaml

Links

biotools: alpine

Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.

package bioconductor-alpine

Versions

1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biostrings >=2.56.0,<2.57.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-graph >=1.66.0,<1.67.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-rbgl >=1.64.0,<1.65.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-speedglm

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-alpine

and update with:

conda update bioconductor-alpine

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-alpine:<tag>

(see bioconductor-alpine/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-alpine/README.html)