Package Recipe 'bioconductor-aneufinder'

recipe bioconductor-aneufinder

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/AneuFinder.html
License:: Artistic-2.0
Recipe:: /bioconductor-aneufinder/meta.yaml

AneuFinder implements functions for copy-number detection, breakpoint detection, and karyotype and heterogeneity analysis in single-cell whole genome sequencing and strand-seq data.

package bioconductor-aneufinder¶

Versions:

1.26.0-0, 1.22.0-2, 1.22.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-1,

1.26.0-0, 1.22.0-2, 1.22.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-1, 1.12.0-1, 1.10.1-0

Depends:

bioconductor-aneufinderdata >=1.26.0,<1.27.0
bioconductor-bamsignals >=1.30.0,<1.31.0
bioconductor-biocgenerics >=0.44.0,<0.45.0
bioconductor-biostrings >=2.66.0,<2.67.0
bioconductor-dnacopy >=1.72.0,<1.73.0
bioconductor-genomeinfodb >=1.34.0,<1.35.0
bioconductor-genomicalignments >=1.34.0,<1.35.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-iranges >=2.32.0,<2.33.0
bioconductor-rsamtools >=2.14.0,<2.15.0
bioconductor-s4vectors >=0.36.0,<0.37.0
libblas >=3.9.0,<4.0a0
libgcc-ng >=12
liblapack >=3.9.0,<4.0a0
libstdcxx-ng >=12
r-base >=4.2,<4.3.0a0
r-cowplot
r-doparallel
r-ecp
r-foreach
r-ggdendro
r-ggplot2
r-ggrepel
r-mclust
r-reordercluster
r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-aneufinder

and update with:

conda update bioconductor-aneufinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aneufinder:<tag>

(see bioconductor-aneufinder/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aneufinder/README.html)