recipe bioconductor-annmap

Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Homepage

https://bioconductor.org/packages/3.14/bioc/html/annmap.html

License

GPL-2

Recipe

/bioconductor-annmap/meta.yaml

Links

biotools: annmap, doi: 10.1093/nar/gkm779

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.

package bioconductor-annmap

Versions

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0, 

1.36.0-0,  1.34.0-0,  1.32.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• r-base >=4.1,<4.2.0a0

• r-dbi

• r-digest

• r-lattice

• r-rmysql >=0.6-0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annmap

and update with:

conda update bioconductor-annmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annmap:<tag>

(see bioconductor-annmap/tags for valid values for <tag>)

Download stats

Link to this page

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