recipe bioconductor-annmap

annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/annmap.html

License

GPL-2

Recipe

/bioconductor-annmap/meta.yaml

Links

biotools: annmap, doi: 10.1093/nar/gkm779

package bioconductor-annmap

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.0-0

Depends

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-rsamtools >=1.34.0,<1.35.0

• r-base >=3.5.1,<3.5.2.0a0

• r-dbi

• r-digest

• r-lattice

• r-rmysql >=0.6-0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annmap

and update with:

conda update bioconductor-annmap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annmap:<tag>

(see bioconductor-annmap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annmap/README.html)