- recipe bioconductor-annmap
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/annmap.html
- License
GPL-2
- Recipe
- Links
biotools: annmap, doi: 10.1093/nar/gkm779
annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.
- package bioconductor-annmap¶
-
- Versions
1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.32.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-genefilter
>=1.76.0,<1.77.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
r-base
>=4.1,<4.2.0a0
r-rmysql
>=0.6-0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-annmap
and update with:
conda update bioconductor-annmap
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-annmap:<tag>
(see bioconductor-annmap/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-annmap/README.html)