bioconductor-annotationhub

downloads

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Home http://bioconductor.org/packages/release/bioc/html/AnnotationHub.html
Versions 2.6.0, 2.8.2
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-annotationhub

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotationhub

and update with:

conda update bioconductor-annotationhub

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-annotationhub.