-
recipe
bioconductor-annotationhub
Client to access AnnotationHub resources
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/AnnotationHub.html
- License
Artistic-2.0
- Recipe
- Links
biotools: annotationhub, doi: 10.1038/nmeth.3252
This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.
-
package
bioconductor-annotationhub
¶ -
- Versions
2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.5-0
,2.14.2-0
,2.12.1-0
,2.10.1-0
,2.10.0-0
,2.22.0-0
,2.20.0-0
,2.18.0-0
,2.16.0-1
,2.14.5-0
,2.14.2-0
,2.12.1-0
,2.10.1-0
,2.10.0-0
,2.8.2-0
,2.6.0-0
- Depends
bioconductor-annotationdbi
>=1.52.0,<1.53.0
bioconductor-biocfilecache
>=1.14.0,<1.15.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-biocversion
>=3.12.0,<3.13.0
bioconductor-interactivedisplaybase
>=1.28.0,<1.29.0
bioconductor-s4vectors
>=0.28.0,<0.29.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-annotationhub
and update with:
conda update bioconductor-annotationhub
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-annotationhub:<tag>
(see bioconductor-annotationhub/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-annotationhub/README.html)