Package Recipe 'bioconductor-annotationhub'

recipe bioconductor-annotationhub

Client to access AnnotationHub resources

Homepage: https://bioconductor.org/packages/3.14/bioc/html/AnnotationHub.html
License: Artistic-2.0
Recipe: /bioconductor-annotationhub/meta.yaml
Links: biotools: annotationhub, doi: 10.1038/nmeth.3252

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

package bioconductor-annotationhub¶

Versions

3.2.0-0, 3.0.0-0, 2.22.0-1, 2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-1, 2.14.5-0, 2.14.2-0,

3.2.0-0, 3.0.0-0, 2.22.0-1, 2.22.0-0, 2.20.0-0, 2.18.0-0, 2.16.0-1, 2.14.5-0, 2.14.2-0, 2.12.1-0, 2.10.1-0, 2.10.0-0, 2.8.2-0, 2.6.0-0

Depends

bioconductor-annotationdbi >=1.56.0,<1.57.0
bioconductor-biocfilecache >=2.2.0,<2.3.0
bioconductor-biocgenerics >=0.40.0,<0.41.0
bioconductor-biocversion >=3.14.0,<3.15.0
bioconductor-interactivedisplaybase >=1.32.0,<1.33.0
bioconductor-s4vectors >=0.32.0,<0.33.0
r-base >=4.1,<4.2.0a0
r-biocmanager
r-curl
r-dplyr
r-httr
r-rappdirs
r-rsqlite
r-yaml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-annotationhub

and update with:

conda update bioconductor-annotationhub

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotationhub:<tag>

(see bioconductor-annotationhub/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-annotationhub/README.html)