recipe bioconductor-annotatr

Annotation of Genomic Regions to Genomic Annotations

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/annotatr.html

License:

GPL-3

Recipe:

/bioconductor-annotatr/meta.yaml

Given a set of genomic sites/regions (e.g. ChIP-seq peaks, CpGs, differentially methylated CpGs or regions, SNPs, etc.) it is often of interest to investigate the intersecting genomic annotations. Such annotations include those relating to gene models (promoters, 5'UTRs, exons, introns, and 3'UTRs), CpGs (CpG islands, CpG shores, CpG shelves), or regulatory sequences such as enhancers. The annotatr package provides an easy way to summarize and visualize the intersection of genomic sites/regions with genomic annotations.

package bioconductor-annotatr

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.8.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-regioner >=1.30.0,<1.31.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-readr

• r-reshape2

Required By:

• bioconductor-dmrseq

• bioconductor-scmeth

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-annotatr

and update with:

conda update bioconductor-annotatr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-annotatr:<tag>

(see bioconductor-annotatr/tags for valid values for <tag>)

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