recipe bioconductor-anvilaz

R / Bioconductor Support for the AnVIL Azure Platform

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/AnVILAz.html

License:

Artistic-2.0

Recipe:

/bioconductor-anvilaz/meta.yaml

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVILAz package supports end-users and developers using the AnVIL platform in the Azure cloud. The package provides a programmatic interface to AnVIL resources, including workspaces, notebooks, tables, and workflows. The package also provides utilities for managing resources, including copying files to and from Azure Blob Storage, and creating shared access signatures (SAS) for secure access to Azure resources.

package bioconductor-anvilaz

(downloads) docker_bioconductor-anvilaz

versions:

1.0.0-0

depends bioconductor-anvilbase:

>=1.0.0,<1.1.0

depends bioconductor-biocbaseutils:

>=1.8.0,<1.9.0

depends r-base:

>=4.4,<4.5.0a0

depends r-curl:

depends r-httr2:

depends r-jsonlite:

depends r-rjsoncons:

depends r-tibble:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-anvilaz

and update with::

   mamba update bioconductor-anvilaz

To create a new environment, run:

mamba create --name myenvname bioconductor-anvilaz

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-anvilaz:<tag>

(see `bioconductor-anvilaz/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-anvilaz/README.html)