recipe bioconductor-anvilbase

Generic functions for interacting with the AnVIL ecosystem

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/AnVILBase.html

License:

Artistic-2.0

Recipe:

/bioconductor-anvilbase/meta.yaml

Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.

package bioconductor-anvilbase

(downloads) docker_bioconductor-anvilbase

versions:

1.0.0-0

depends r-base:

>=4.4,<4.5.0a0

depends r-dplyr:

depends r-httr:

depends r-httr2:

depends r-jsonlite:

depends r-tibble:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-anvilbase

and update with::

   mamba update bioconductor-anvilbase

To create a new environment, run:

mamba create --name myenvname bioconductor-anvilbase

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-anvilbase:<tag>

(see `bioconductor-anvilbase/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-anvilbase/README.html)