recipe bioconductor-apalyzer

A toolkit for APA analysis using RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/APAlyzer.html

License:

LGPL-3

Recipe:

/bioconductor-apalyzer/meta.yaml

Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.

package bioconductor-apalyzer

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hybridmtest >=1.42.0,<1.43.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rsubread >=2.12.0,<2.13.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-repmis

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-apalyzer

and update with:

conda update bioconductor-apalyzer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-apalyzer:<tag>

(see bioconductor-apalyzer/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-apalyzer/README.html)