recipe bioconductor-apalyzer

A toolkit for APA analysis using RNA-seq data

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/APAlyzer.html

License:

LGPL-3

Recipe:

/bioconductor-apalyzer/meta.yaml

Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.

package bioconductor-apalyzer

Versions:

1.8.0-0,  1.6.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-deseq2 >=1.34.0,<1.35.0

• bioconductor-ensembldb >=2.18.0,<2.19.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rsubread >=2.8.0,<2.9.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• bioconductor-variantannotation >=1.40.0,<1.41.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-repmis

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-apalyzer

and update with:

conda update bioconductor-apalyzer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-apalyzer:<tag>

(see bioconductor-apalyzer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-apalyzer/README.html)