- recipe bioconductor-apalyzer
A toolkit for APA analysis using RNA-seq data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/APAlyzer.html
- License:
LGPL-3
- Recipe:
Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.
- package bioconductor-apalyzer¶
-
- Versions:
1.8.0-0
,1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-ensembldb
>=2.18.0,<2.19.0
bioconductor-genomicalignments
>=1.30.0,<1.31.0
bioconductor-genomicfeatures
>=1.46.0,<1.47.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-rsubread
>=2.8.0,<2.9.0
bioconductor-rtracklayer
>=1.54.0,<1.55.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-variantannotation
>=1.40.0,<1.41.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-apalyzer
and update with:
conda update bioconductor-apalyzer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-apalyzer:<tag>
(see bioconductor-apalyzer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-apalyzer/README.html)