recipe bioconductor-apalyzer

A toolkit for APA analysis using RNA-seq data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/APAlyzer.html

License

LGPL-3

Recipe

/bioconductor-apalyzer/meta.yaml

Perform 3'UTR APA, Intronic APA and gene expression analysis using RNA-seq data.

package bioconductor-apalyzer

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-deseq >=1.39.0,<1.40.0

• bioconductor-ensembldb >=2.12.0,<2.13.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-rsubread >=2.2.0,<2.3.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• bioconductor-variantannotation >=1.34.0,<1.35.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-repmis

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-apalyzer

and update with:

conda update bioconductor-apalyzer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-apalyzer:<tag>

(see bioconductor-apalyzer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-apalyzer/README.html)