recipe bioconductor-apeglm

Approximate posterior estimation for GLM coefficients

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/apeglm.html

License:

GPL-2

Recipe:

/bioconductor-apeglm/meta.yaml

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

package bioconductor-apeglm

Versions:

1.20.0-1,  1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0, 

1.20.0-1,  1.20.0-0,  1.16.0-2,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0,  1.2.1-0,  1.0.3-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-emdbook

• r-rcpp

• r-rcppeigen

• r-rcppnumerical

Required By:

• bioconductor-tekrabber

• r-deseqanalysis

• flair

• bioconductor-diffbind

• bioconductor-debrowser

• bioconductor-airpart

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-apeglm

and update with:

conda update bioconductor-apeglm

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-apeglm:<tag>

(see bioconductor-apeglm/tags for valid values for <tag>)

Download stats

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