recipe bioconductor-arrayexpress

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ArrayExpress.html

License

Artistic-2.0

Recipe

/bioconductor-arrayexpress/meta.yaml

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

package bioconductor-arrayexpress

Versions

1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.1-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-oligo >=1.52.0,<1.53.0

• r-base >=4.0,<4.1.0a0

• r-xml

Required By

• bioconductor-drugvsdisease

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayexpress

and update with:

conda update bioconductor-arrayexpress

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayexpress:<tag>

(see bioconductor-arrayexpress/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arrayexpress/README.html)