recipe bioconductor-arrayexpress

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ArrayExpress.html

License

Artistic-2.0

Recipe

/bioconductor-arrayexpress/meta.yaml

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

package bioconductor-arrayexpress

Versions

1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0, 

1.54.0-0,  1.52.0-0,  1.50.0-1,  1.50.0-0,  1.48.0-0,  1.46.0-0,  1.44.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-0,  1.36.1-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-oligo >=1.58.0,<1.59.0

• r-base >=4.1,<4.2.0a0

• r-xml

Required By

• bioconductor-drugvsdisease

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayexpress

and update with:

conda update bioconductor-arrayexpress

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayexpress:<tag>

(see bioconductor-arrayexpress/tags for valid values for <tag>)

Download stats

Link to this page

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