recipe bioconductor-arrayqualitymetrics

Quality metrics report for microarray data sets

Homepage

https://bioconductor.org/packages/3.11/bioc/html/arrayQualityMetrics.html

License

LGPL (>= 2)

Recipe

/bioconductor-arrayqualitymetrics/meta.yaml

Links

biotools: arrayqualitymetrics

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

package bioconductor-arrayqualitymetrics

Versions

3.44.0-0,  3.42.0-0,  3.40.0-1,  3.38.0-0,  3.36.0-0,  3.34.0-0

Depends

• bioconductor-affy >=1.66.0,<1.67.0

• bioconductor-affyplm >=1.64.0,<1.65.0

• bioconductor-beadarray >=2.38.0,<2.39.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-vsn >=3.56.0,<3.57.0

• r-base >=4.0,<4.1.0a0

• r-gridsvg >=1.4-3

• r-hmisc

• r-hwriter

• r-lattice

• r-latticeextra

• r-rcolorbrewer

• r-setrng

• r-svglite

• r-xml

Required By

• bioconductor-egad

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayqualitymetrics

and update with:

conda update bioconductor-arrayqualitymetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayqualitymetrics:<tag>

(see bioconductor-arrayqualitymetrics/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arrayqualitymetrics/README.html)