recipe bioconductor-arrayqualitymetrics

Quality metrics report for microarray data sets

Homepage

https://bioconductor.org/packages/3.14/bioc/html/arrayQualityMetrics.html

License

LGPL (>= 2)

Recipe

/bioconductor-arrayqualitymetrics/meta.yaml

Links

biotools: arrayqualitymetrics

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

package bioconductor-arrayqualitymetrics

Versions

3.50.0-0,  3.48.0-0,  3.46.0-1,  3.46.0-0,  3.44.0-0,  3.42.0-0,  3.40.0-1,  3.38.0-0,  3.36.0-0, 

3.50.0-0,  3.48.0-0,  3.46.0-1,  3.46.0-0,  3.44.0-0,  3.42.0-0,  3.40.0-1,  3.38.0-0,  3.36.0-0,  3.34.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-affyplm >=1.70.0,<1.71.0

• bioconductor-beadarray >=2.44.0,<2.45.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-vsn >=3.62.0,<3.63.0

• r-base >=4.1,<4.2.0a0

• r-gridsvg >=1.4-3

• r-hmisc

• r-hwriter

• r-lattice

• r-latticeextra

• r-rcolorbrewer

• r-setrng

• r-svglite

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayqualitymetrics

and update with:

conda update bioconductor-arrayqualitymetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayqualitymetrics:<tag>

(see bioconductor-arrayqualitymetrics/tags for valid values for <tag>)

Download stats

Link to this page

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