recipe bioconductor-arrayqualitymetrics

This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/arrayQualityMetrics.html

License

LGPL (>= 2)

Recipe

/bioconductor-arrayqualitymetrics/meta.yaml

Links

biotools: arrayqualitymetrics

package bioconductor-arrayqualitymetrics

Versions

3.38.0-0, 3.36.0-0, 3.34.0-0

Depends

• bioconductor-affy >=1.60.0,<1.61.0

• bioconductor-affyplm >=1.58.0,<1.59.0

• bioconductor-beadarray >=2.32.0,<2.33.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-vsn >=3.50.0,<3.51.0

• r-base >=3.5.1,<3.5.2.0a0

• r-cairo >=1.4-6

• r-gridsvg >=1.4-3

• r-hmisc

• r-hwriter

• r-lattice

• r-latticeextra

• r-rcolorbrewer

• r-setrng

• r-xml

Required By

• bioconductor-egad

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayqualitymetrics

and update with:

conda update bioconductor-arrayqualitymetrics

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayqualitymetrics:<tag>

(see bioconductor-arrayqualitymetrics/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arrayqualitymetrics/README.html)