recipe bioconductor-asafe

Given admixed individuals’ bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ASAFE.html

License

Artistic-2.0

Recipe

/bioconductor-asafe/meta.yaml

Links

biotools: asafe, doi: 10.1093/bioinformatics/btw220

package bioconductor-asafe

(downloads) docker_bioconductor-asafe

Versions

1.10.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-asafe

and update with:

conda update bioconductor-asafe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-asafe:<tag>

(see bioconductor-asafe/tags for valid values for <tag>)