recipe bioconductor-assign

ASSIGN is a computational tool to evaluate the pathway deregulation/activation status in individual patient samples. ASSIGN employs a flexible Bayesian factor analysis approach that adapts predetermined pathway signatures derived either from knowledge-based literature or from perturbation experiments to the cell-/tissue-specific pathway signatures. The deregulation/activation level of each context-specific pathway is quantified to a score, which represents the extent to which a patient sample encompasses the pathway deregulation/activation signature.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ASSIGN.html

License

MIT + file LICENSE

Recipe

/bioconductor-assign/meta.yaml

package bioconductor-assign

(downloads) docker_bioconductor-assign

Versions

1.18.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-assign

and update with:

conda update bioconductor-assign

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-assign:<tag>

(see bioconductor-assign/tags for valid values for <tag>)